Ala_g28093

Description : MRM1-type rRNA methyltransferase & original description: none

Gene families : OG0006766 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006766_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g28093
Cluster	HCCA: Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
Adi_g026480	No alias	MRM1-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g02547	No alias	MRM1-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g03347	No alias	MRM1-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.1Z044300.1	Ceric.1Z044300	MRM1-type rRNA methyltransferase & original description:...	0.05	OrthoFinder output from all 47 species
Dac_g32801	No alias	MRM1-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g24467	No alias	MRM1-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g38975	No alias	MRM1-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013123	SpoU_subst-bd	492	576
IPR001537	SpoU_MeTrfase	595	719

External Links

No external refs found!

Ala_g28093

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation