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  5. Ala_g27246

Ala_g27246 (SCD1)


Aliases : SCD1

Description : component *(SCD1)of post-Golgi trafficking SCD complex & original description: none


Gene families : OG0004472 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004472_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g27246

Target Alias Description ECC score Gene Family Method Actions
AT1G49040 SCD1 stomatal cytokinesis defective / SCD1 protein (SCD1) 0.04 OrthoFinder output from all 47 species
Aev_g01559 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene31784.t1 SCD1, Aspi01Gene31784 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001574.10 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre07.g352900 No alias DENN domain and WD repeat-containing protein SCD1... 0.02 OrthoFinder output from all 47 species
Dcu_g06506 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.05 OrthoFinder output from all 47 species
Ehy_g26018 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.02 OrthoFinder output from all 47 species
Lfl_g05730 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.06 OrthoFinder output from all 47 species
Mp5g20500.1 SCD1 SCD1 component of post-Golgi trafficking SCD complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001194 cDENN_dom 129 312
IPR001680 WD40_repeat 1038 1071
IPR001680 WD40_repeat 1004 1031
IPR001680 WD40_repeat 858 906
IPR001680 WD40_repeat 1076 1112
IPR001680 WD40_repeat 953 989
IPR001680 WD40_repeat 916 948
IPR005113 uDENN_dom 41 109
No external refs found!