1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g02413

Lfl_g02413


Description : not classified & original description: none


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g02413

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00237040 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G48650 No alias DEA(D/H)-box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Adi_g023361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g29313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58524.t1 Aspi01Gene58524 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63075.t1 Aspi01Gene63075 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene70472.t2 Aspi01Gene70472 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11503 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.23G070100.1 Ceric.23G070100 not classified & original description: pacid=50609964... 0.03 OrthoFinder output from all 47 species
Dac_g11272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011809001 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.02 OrthoFinder output from all 47 species
GSVIVT01034780001 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g006970.4.1 Solyc01g006970 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Tin_g02897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR014720 dsRBD_dom 1096 1157
IPR011545 DEAD/DEAH_box_helicase_dom 306 462
IPR001650 Helicase_C 569 699
IPR007502 Helicase-assoc_dom 763 838
IPR011709 DEAD-box_helicase_OB_fold 922 1001
No external refs found!