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  5. Lfl_g02372

Lfl_g02372


Description : E4 polyubiquitination factor *(UFD2) & original description: none


Gene families : OG0003921 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g02372

Target Alias Description ECC score Gene Family Method Actions
AT5G15400 No alias U-box domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g004534 No alias E4 polyubiquitination factor *(UFD2) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g15646 No alias E4 polyubiquitination factor *(UFD2) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g29326 No alias E4 polyubiquitination factor *(UFD2) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07387 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G013400.1 Ceric.11G013400 E4 polyubiquitination factor *(UFD2) & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000076.105 No alias Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g39853 No alias E4 polyubiquitination factor *(UFD2) & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01011484001 No alias Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
MA_10371085g0010 No alias E4 multiubiquitination enzyme (UFD2) 0.02 OrthoFinder output from all 47 species
Msp_g06036 No alias E4 polyubiquitination factor *(UFD2) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08916 No alias E4 polyubiquitination factor *(UFD2) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13038 No alias E4 polyubiquitination factor *(UFD2) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002179 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Sam_g10578 No alias E4 polyubiquitination factor *(UFD2) & original description: none 0.02 OrthoFinder output from all 47 species
Smo142432 No alias Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc02g088550.4.1 Solyc02g088550 E4 multiubiquitination enzyme (UFD2) 0.02 OrthoFinder output from all 47 species
Zm00001e002031_P002 Zm00001e002031 E4 multiubiquitination enzyme (UFD2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0061666 UFM1 ligase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0071568 UFM1 transferase activity IEP HCCA
BP GO:0071569 protein ufmylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR019474 Ub_conjug_fac_E4_core 269 948
IPR003613 Ubox_domain 965 1035
No external refs found!