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  5. Lfl_g02370

Lfl_g02370 (ATRAD18, SMC6B, MIM)


Aliases : ATRAD18, SMC6B, MIM

Description : component *(SMC6) of homologous recombination repair Smc5-Smc6 complex & original description: none


Gene families : OG0004807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004807_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g02370
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AT5G07660 SMC6A structural maintenance of chromosomes 6A 0.02 OrthoFinder output from all 47 species
AT5G61460 ATRAD18, SMC6B, MIM P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Adi_g081122 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.06 OrthoFinder output from all 47 species
Ala_g08493 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.05 OrthoFinder output from all 47 species
Als_g11694 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Aob_g11379 SMC6A component *(SMC6) of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
Aop_g09177 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Aspi01Gene38317.t1 ATRAD18, SMC6B,... component *(SMC6) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Ceric.03G053800.1 ATRAD18, SMC6B,... component *(SMC6) of homologous recombination repair... 0.07 OrthoFinder output from all 47 species
Dcu_g09369 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Ehy_g20059 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
LOC_Os09g03370.1 SMC6A, LOC_Os09g03370 Structural maintenance of chromosomes protein 6A... 0.02 OrthoFinder output from all 47 species
Ore_g08000 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Pnu_g09019 SMC6A component *(SMC6) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Solyc05g051680.4.1 ATRAD18, SMC6B,... component SMC6 of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Tin_g39944 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Zm00001e033734_P001 ATRAD18, SMC6B,... component SMC6 of homologous recombination repair... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 19 1042
No external refs found!