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  5. Lfl_g02303

Lfl_g02303 (SIZ1, ATSIZ1)


Aliases : SIZ1, ATSIZ1

Description : E3 SUMO ubiquitin ligase *(SIZ1) & original description: none


Gene families : OG0002076 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002076_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g02303

Target Alias Description ECC score Gene Family Method Actions
Adi_g057778 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16402 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene47117.t1 SIZ1, ATSIZ1,... E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g62439 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z183600.1 SIZ1, ATSIZ1,... E3 SUMO ubiquitin ligase *(SIZ1) & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g09780 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03983 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_39019 SIZ1, ATSIZ1 SUMO E3 ligase (SIZ1) 0.03 OrthoFinder output from all 47 species
LOC_Os03g50980.1 SIZ1, ATSIZ1,... SUMO E3 ligase (SIZ1) 0.04 OrthoFinder output from all 47 species
MA_10436942g0020 SIZ1, ATSIZ1 SUMO E3 ligase (SIZ1) 0.02 OrthoFinder output from all 47 species
MA_159932g0010 SIZ1, ATSIZ1 E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp6g08590.1 SIZ1, ATSIZ1 SUMO E3 ligase (SIZ1) 0.03 OrthoFinder output from all 47 species
Ore_g08626 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08461 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g10453 SIZ1, ATSIZ1 E3 SUMO ubiquitin ligase *(SIZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g069160.3.1 SIZ1, ATSIZ1,... SUMO E3 ligase (SIZ1) 0.03 OrthoFinder output from all 47 species
Zm00001e027582_P001 SIZ1, ATSIZ1,... SUMO E3 ligase (SIZ1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004181 Znf_MIZ 397 445
No external refs found!