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  5. Ala_g22401

Ala_g22401


Description : mRNA stability factor *(CRP1) & original description: none


Gene families : OG0007882 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007882_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g22401
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AT5G42310 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g016489 No alias mRNA stability factor *(CRP1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z098800.1 Ceric.1Z098800 mRNA stability factor *(CRP1) & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01013362001 No alias Pentatricopeptide repeat-containing protein At5g42310,... 0.05 OrthoFinder output from all 47 species
Len_g13834 No alias mRNA stability factor *(CRP1) & original description: none 0.05 OrthoFinder output from all 47 species
MA_65267g0010 No alias plastidial mRNA processing factor (CRP1) 0.02 OrthoFinder output from all 47 species
Mp5g09810.1 No alias plastidial mRNA processing factor (CRP1) 0.03 OrthoFinder output from all 47 species
Pir_g10878 No alias mRNA stability factor *(CRP1) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g08923 No alias mRNA stability factor *(CRP1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11011 No alias mRNA stability factor *(CRP1) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g52447 No alias mRNA stability factor *(CRP1) & original description: none 0.02 OrthoFinder output from all 47 species
Smo135281 No alias Pentatricopeptide repeat-containing protein At5g42310,... 0.02 OrthoFinder output from all 47 species
Spa_g22309 No alias mRNA stability factor *(CRP1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 509 556
IPR033443 PPR_long 267 434
IPR002885 Pentatricopeptide_repeat 576 608
IPR002885 Pentatricopeptide_repeat 478 506
IPR002885 Pentatricopeptide_repeat 618 647
IPR002885 Pentatricopeptide_repeat 447 472
No external refs found!