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  5. Lfl_g02206

Lfl_g02206 (CHA18, CHR18)


Aliases : CHA18, CHR18

Description : chromatin remodeling factor *(SMARCAL1) & original description: none


Gene families : OG0002390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002390_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g02206

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001368.11 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os07g44210.1 CHA18, CHR18,... chromatin remodeling factor (SMARCAL1) 0.02 OrthoFinder output from all 47 species
Pir_g45727 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g41946 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e035658_P002 CHA18, CHR18,... chromatin remodeling factor (SMARCAL1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 718 824
IPR000330 SNF2_N 433 697
No external refs found!