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  5. Ala_g21891

Ala_g21891


Description : scaffold factor *(COILIN) of Cajal body formation & original description: none


Gene families : OG0006961 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006961_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g21891

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00174p00042990 evm_27.TU.AmTr_v1... Coilin OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Cba_g15718 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.04 OrthoFinder output from all 47 species
Ore_g18525 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.04 OrthoFinder output from all 47 species
Pir_g22633 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.03 OrthoFinder output from all 47 species
Pir_g25243 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.04 OrthoFinder output from all 47 species
Solyc05g013740.3.1 Solyc05g013740 Coilin OS=Arabidopsis thaliana (sp|q8rwk8|coil_arath : 162.0) 0.03 OrthoFinder output from all 47 species
Tin_g28987 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.04 OrthoFinder output from all 47 species
Zm00001e040792_P001 Zm00001e040792 Coilin OS=Arabidopsis thaliana (sp|q8rwk8|coil_arath : 220.0) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR031722 Coilin_N 11 226
No external refs found!