Ala_g21578 (SNL3, ATSIN3, SIN3)

Aliases : SNL3, ATSIN3, SIN3

Description : component *(SNL) of histone deacetylase machineries & original description: none

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g21578
Cluster	HCCA: Cluster_145

Target	Alias	Description	ECC score	Gene Family Method
AT1G10450	SNL6	SIN3-like 6	0.05	OrthoFinder output from all 47 species
AT1G24190	SNL3, ATSIN3, SIN3	SIN3-like 3	0.1	OrthoFinder output from all 47 species
AT1G70060	SNL4	SIN3-like 4	0.03	OrthoFinder output from all 47 species
AT3G01320	SNL1	SIN3-like 1	0.1	OrthoFinder output from all 47 species
AT5G15020	SNL2	SIN3-like 2	0.1	OrthoFinder output from all 47 species
Adi_g013447	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Adi_g057345	SNL2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g058426	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Adi_g088432	SNL3, ATSIN3, SIN3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g117146	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Aev_g21851	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Ala_g17667	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Als_g16311	SNL3, ATSIN3, SIN3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g22302	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Als_g52097	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.07	OrthoFinder output from all 47 species
Aob_g27014	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.09	OrthoFinder output from all 47 species
Aob_g29157	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.07	OrthoFinder output from all 47 species
Aop_g00817	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene27809.t1	SNL4, Aspi01Gene27809	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene32665.t1	SNL4, Aspi01Gene32665	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene46934.t1	SNL3, ATSIN3,...	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene56982.t1	SNL3, ATSIN3,...	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Azfi_s0048.g030537	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Cba_g06817	SNL4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g07499	SNL2	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Cba_g77516	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Ceric.02G103800.1	SNL4, Ceric.02G103800	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ceric.31G072300.1	SNL4, Ceric.31G072300	component *(SNL) of histone deacetylase machineries &...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001155.28	SNL3, ATSIN3, SIN3	Paired amphipathic helix protein Sin3-like 1...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021234.23	SNL5	Paired amphipathic helix protein Sin3-like 3...	0.02	OrthoFinder output from all 47 species
Cre03.g180800	SNL4	Paired amphipathic helix protein Sin3-like 4...	0.03	OrthoFinder output from all 47 species
Dcu_g18941	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Dcu_g18942	SNL4	component *(SNL) of histone deacetylase machineries &...	0.06	OrthoFinder output from all 47 species
Dde_g18720	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Ehy_g07946	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Ehy_g10035	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
GSVIVT01020136001	SNL3, ATSIN3, SIN3	Chromatin organisation.histone modifications.histone...	0.06	OrthoFinder output from all 47 species
GSVIVT01032579001	SNL2	Chromatin organisation.histone modifications.histone...	0.07	OrthoFinder output from all 47 species
LOC_Os05g01020.2	SNL4, LOC_Os05g01020	component SNL of histone deacetylase machineries	0.04	OrthoFinder output from all 47 species
Len_g04844	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Len_g58076	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Lfl_g03500	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Lfl_g03517	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.06	OrthoFinder output from all 47 species
MA_18241g0010	SNL4	component SNL of histone deacetylase machineries	0.07	OrthoFinder output from all 47 species
Mp7g11300.1	SNL5	Paired amphipathic helix protein Sin3-like 2...	0.03	OrthoFinder output from all 47 species
Nbi_g09686	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ore_g30140	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Pir_g13056	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Pir_g18041	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Ppi_g09115	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Sam_g14557	No alias	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Sam_g25571	No alias	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Sam_g29972	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g35727	No alias	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Smo440352	SNL4	Chromatin organisation.histone modifications.histone...	0.03	OrthoFinder output from all 47 species
Solyc02g067570.3.1	SNL2, Solyc02g067570	component SNL of histone deacetylase machineries	0.09	OrthoFinder output from all 47 species
Solyc02g087360.4.1	SNL2, Solyc02g087360	component SNL of histone deacetylase machineries	0.07	OrthoFinder output from all 47 species
Spa_g15712	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Spa_g18268	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Tin_g13041	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Tin_g19320	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Zm00001e017111_P002	SNL4, Zm00001e017111	component SNL of histone deacetylase machineries	0.05	OrthoFinder output from all 47 species
Zm00001e025644_P001	SNL4, Zm00001e025644	component SNL of histone deacetylase machineries	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR031693	Sin3_C	1102	1358
IPR013194	HDAC_interact_dom	498	590
IPR003822	PAH	58	101
IPR003822	PAH	357	401
IPR003822	PAH	142	186

External Links

No external refs found!

Ala_g21578 (SNL3, ATSIN3, SIN3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation