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  5. Lfl_g02128

Lfl_g02128 (THO5, AtTHO5)


Aliases : THO5, AtTHO5

Description : component *(THOC5) of mRNP trafficking THO subcomplex & original description: none


Gene families : OG0003012 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003012_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g02128

Target Alias Description ECC score Gene Family Method Actions
Ceric.27G022600.1 THO5, AtTHO5,... component *(THOC5) of mRNP trafficking THO subcomplex &... 0.03 OrthoFinder output from all 47 species
Len_g10726 THO5, AtTHO5 component *(THOC5) of mRNP trafficking THO subcomplex &... 0.03 OrthoFinder output from all 47 species
Msp_g05710 THO5, AtTHO5 component *(THOC5) of mRNP trafficking THO subcomplex &... 0.02 OrthoFinder output from all 47 species
Sam_g12861 No alias component *(THOC5) of mRNP trafficking THO subcomplex &... 0.02 OrthoFinder output from all 47 species
Spa_g00467 THO5, AtTHO5 component *(THOC5) of mRNP trafficking THO subcomplex &... 0.02 OrthoFinder output from all 47 species
Tin_g03486 THO5, AtTHO5 component *(THOC5) of mRNP trafficking THO subcomplex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR019163 THO_Thoc5 49 406
No external refs found!