Aliases : EMB1989, RPB2, NRPB2
Description : component *(NRPB2) of RNA polymerase II complex & original description: none
Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00020p00246930 | NRPC2,... | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00068p00181410 | EMB1989, RPB2,... | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.07 | OrthoFinder output from all 47 species | |
Adi_g061129 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.03 | OrthoFinder output from all 47 species | |
Als_g03892 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.05 | OrthoFinder output from all 47 species | |
Aspi01Gene15628.t1 | EMB1989, RPB2,... | component *(NRPB2) of RNA polymerase II complex &... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.05G021300.1 | EMB1989, RPB2,... | component *(NRPB2) of RNA polymerase II complex &... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.30G032600.1 | NRPC2, Ceric.30G032600 | component *(NRPC2) of RNA polymerase III complex &... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000158.16 | EMB1989, RPB2, NRPB2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020554.10 | NRPC2 | DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020554.9 | NRPC2 | DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Cre02.g075150 | EMB1989, RPB2, NRPB2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g09431 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.1 | OrthoFinder output from all 47 species | |
Dcu_g32270 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.05 | OrthoFinder output from all 47 species | |
Dde_g01758 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.09 | OrthoFinder output from all 47 species | |
Ehy_g17296 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01020543001 | EMB1989, RPB2, NRPB2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.07 | OrthoFinder output from all 47 species | |
GSVIVT01035963001 | DRD2, NRPE2,... | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01036596001 | NRPC2 | DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01036597001 | NRPC2 | DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
Gb_05262 | NRPC2 | subunit 2 of Pol III RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
Gb_30006 | EMB1989, RPB2, NRPB2 | subunit 2 of Pol II RNA polymerase | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g44484.1 | EMB1989, RPB2,... | DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os04g54840.1 | DRD2, NRPE2,... | subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... | 0.03 | OrthoFinder output from all 47 species | |
Len_g16317 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.04 | OrthoFinder output from all 47 species | |
Len_g29891 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.05 | OrthoFinder output from all 47 species | |
Lfl_g04274 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g12805 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.03 | OrthoFinder output from all 47 species | |
MA_10233545g0010 | EMB1989, RPB2, NRPB2 | DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... | 0.02 | OrthoFinder output from all 47 species | |
MA_10429035g0010 | EMB1989, RPB2, NRPB2 | DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... | 0.03 | OrthoFinder output from all 47 species | |
MA_10429035g0020 | EMB1989, RPB2, NRPB2 | subunit 2 of Pol II RNA polymerase | 0.04 | OrthoFinder output from all 47 species | |
MA_10429035g0030 | EMB1989, RPB2, NRPB2 | DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
MA_10432131g0010 | EMB1989, RPB2, NRPB2 | DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... | 0.02 | OrthoFinder output from all 47 species | |
Mp4g21160.1 | EMB1989, RPB2, NRPB2 | subunit 2 of Pol II RNA polymerase | 0.02 | OrthoFinder output from all 47 species | |
Mp5g21260.1 | DRD2, NRPE2,... | subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g14155 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g01478 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.06 | OrthoFinder output from all 47 species | |
Ore_g18280 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g25703 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.05 | OrthoFinder output from all 47 species | |
Pir_g54715 | EMB1989, RPB2, NRPB2 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0221.g026211 | No alias | not classified & original description: CDS=1-603 | 0.02 | OrthoFinder output from all 47 species | |
Sam_g26686 | No alias | component *(NRPB2) of RNA polymerase II complex &... | 0.03 | OrthoFinder output from all 47 species | |
Smo148107 | EMB1989, RPB2, NRPB2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.05 | OrthoFinder output from all 47 species | |
Smo443461 | NRPC2 | RNA biosynthesis.transcriptional activation.AP2/ERF... | 0.05 | OrthoFinder output from all 47 species | |
Solyc02g078260.3.1 | EMB1989, RPB2,... | subunit 2 of Pol II RNA polymerase | 0.02 | OrthoFinder output from all 47 species | |
Spa_g04426 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e005007_P001 | EMB1989, RPB2,... | subunit 2 of Pol II RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e012400_P001 | EMB1989, RPB2,... | subunit 2 of Pol II RNA polymerase | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000145 | exocyst | IEP | HCCA |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | HCCA |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
MF | GO:0019899 | enzyme binding | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
BP | GO:0022406 | membrane docking | IEP | HCCA |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
MF | GO:0044877 | protein-containing complex binding | IEP | HCCA |
BP | GO:0048278 | vesicle docking | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
BP | GO:0051640 | organelle localization | IEP | HCCA |
CC | GO:0099023 | vesicle tethering complex | IEP | HCCA |
BP | GO:0140029 | exocytic process | IEP | HCCA |
BP | GO:0140056 | organelle localization by membrane tethering | IEP | HCCA |
No external refs found! |