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  5. Lfl_g02072

Lfl_g02072 (SE)


Aliases : SE

Description : component *(SERRATE) of DCL1-HYL1 miRNA biogenesis complex & original description: none


Gene families : OG0003096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003096_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g02072

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00219930 SE,... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
Adi_g061118 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Als_g04823 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Als_g26903 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g02258 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Aspi01Gene05173.t1 SE, Aspi01Gene05173 component *(SERRATE) of DCL1-HYL1 miRNA bioGenesis... 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000578 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Cba_g20740 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Ceric.03G039000.1 SE, Ceric.03G039000 component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.05 OrthoFinder output from all 47 species
Dac_g03821 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.04 OrthoFinder output from all 47 species
Dcu_g14201 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Dde_g10898 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Ehy_g08633 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
GSVIVT01027348001 SE RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
GSVIVT01037454001 SE RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 OrthoFinder output from all 47 species
Gb_37971 SE C2H2 zinc finger transcription factor. component SERRATE... 0.03 OrthoFinder output from all 47 species
LOC_Os06g48530.1 SE, LOC_Os06g48530 C2H2 zinc finger transcription factor. component SERRATE... 0.03 OrthoFinder output from all 47 species
MA_10426519g0010 SE C2H2 zinc finger transcription factor. component SERRATE... 0.04 OrthoFinder output from all 47 species
Mp1g23090.1 SE C2H2 zinc finger transcription factor. component SERRATE... 0.05 OrthoFinder output from all 47 species
Msp_g00688 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.05 OrthoFinder output from all 47 species
Nbi_g10038 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Ore_g36418 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.04 OrthoFinder output from all 47 species
Pir_g04707 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Pnu_g00841 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Ppi_g62657 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s3319.g028716 SE not classified & original description: CDS=1-597 0.04 OrthoFinder output from all 47 species
Sam_g19467 No alias component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Solyc01g009090.3.1 SE, Solyc01g009090 C2H2 zinc finger transcription factor. component SERRATE... 0.03 OrthoFinder output from all 47 species
Spa_g54768 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Tin_g09411 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021933 SERRATE/Ars2_N 170 260
IPR007042 SERRATE/Ars2_C 413 617
No external refs found!