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  5. Ala_g20545

Ala_g20545 (CHA2, CHR2, BRM, ATBRM)


Aliases : CHA2, CHR2, BRM, ATBRM

Description : SMARCA component *(SYD/BRM/MINU) & original description: none


Gene families : OG0002912 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002912_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g20545
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00216420 CHA2, CHR2, BRM,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.05 OrthoFinder output from all 47 species
Als_g22916 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g14182 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07129 CHA2, CHR2, BRM, ATBRM not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g57815 CHA2, CHR2, BRM, ATBRM not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G062400.1 CHA2, CHR2, BRM,... SMARCA component *(SYD/BRM/MINU) & original description:... 0.1 OrthoFinder output from all 47 species
Cre07.g325700 CHA2, CHR2, BRM, ATBRM ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g02061 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g20820 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01026952001 CHA2, CHR2, BRM, ATBRM Chromatin organisation.chromatin remodeling... 0.09 OrthoFinder output from all 47 species
LOC_Os02g02290.1 CHA2, CHR2, BRM,... ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g02927 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07447 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
MA_137856g0010 CHA2, CHR2, BRM, ATBRM chromatin remodeling factor (Snf2) 0.06 OrthoFinder output from all 47 species
MA_470488g0010 CHA2, CHR2, BRM, ATBRM ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_637555g0010 CHA2, CHR2, BRM, ATBRM ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp1g17010.1 CHA2, CHR2, BRM, ATBRM chromatin remodeling factor (Snf2) 0.03 OrthoFinder output from all 47 species
Msp_g15066 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16650 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g28370 CHA2, CHR2, BRM, ATBRM not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g29869 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g42346 CHA2, CHR2, BRM, ATBRM not classified & original description: none 0.09 OrthoFinder output from all 47 species
Pir_g57219 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29021 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g37198 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g094800.4.1 CHA2, CHR2, BRM,... chromatin remodeling factor (Snf2) 0.07 OrthoFinder output from all 47 species
Spa_g50991 CHA2, CHR2, BRM, ATBRM SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56003 CHA2, CHR2, BRM, ATBRM not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e013442_P001 CHA2, CHR2, BRM,... chromatin remodeling factor (Snf2) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 1497 1609
IPR001487 Bromodomain 2175 2239
IPR000330 SNF2_N 1170 1475
No external refs found!