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  5. Ala_g20383

Ala_g20383


Description : not classified & original description: none


Gene families : OG0003479 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003479_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g20383
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
Adi_g021495 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27303 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g21824 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70643 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23070 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28726 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g36294 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g44739 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g26793 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g51836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19946 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g38094 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 44 91
IPR002885 Pentatricopeptide_repeat 148 171
No external refs found!