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  5. Ala_g20164

Ala_g20164


Description : mitochondrial RNA splicing factor *(ABO5) & original description: none


Gene families : OG0005617 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005617_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g20164
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Als_g04436 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species
Als_g56987 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species
Aop_g09293 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species
Cba_g04670 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G079300.1 Ceric.12G079300 not classified & original description: pacid=50601573... 0.03 OrthoFinder output from all 47 species
Dde_g06863 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34233 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0112.g020774 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species
Tin_g10630 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species
Tin_g26992 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 570 598
IPR002885 Pentatricopeptide_repeat 327 356
IPR002885 Pentatricopeptide_repeat 293 322
IPR002885 Pentatricopeptide_repeat 659 716
IPR002885 Pentatricopeptide_repeat 360 406
IPR002885 Pentatricopeptide_repeat 432 477
IPR002885 Pentatricopeptide_repeat 601 650
No external refs found!