1. Home
  2. Species
  3. Adiantum latifolium
  4. Sequence
  5. Ala_g19873

Ala_g19873 (CAF2, ATCAF2)


Aliases : CAF2, ATCAF2

Description : component *(CAF) of CRS2-CAF plastidial RNA splicing factor complexes & original description: none


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g19873

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00043140 ATCAF1, CAF1,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AT2G20020 ATCAF1, CAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g015702 ATCAF1, CAF1 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Adi_g106797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34328 ATCAF1, CAF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0435.g069919 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Cba_g06914 CAF2, ATCAF2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12900 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Ceric.11G050500.1 CAF2, ATCAF2,... component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Ceric.13G021700.1 ATCAF1, CAF1,... component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Dcu_g14796 ATCAF1, CAF1 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.07 OrthoFinder output from all 47 species
Ehy_g19169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_15740 CAF2, ATCAF2 component CAF of CRS2-CAF plastidial RNA splicing factor... 0.03 OrthoFinder output from all 47 species
Len_g08762 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Nbi_g24662 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Ore_g08767 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Ppi_g03045 ATCAF1, CAF1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g56937 CAF2, ATCAF2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0237.g026578 ATCAF1, CAF1 not classified & original description: CDS=1-570 0.03 OrthoFinder output from all 47 species
Solyc05g018240.4.1 ATCAF1, CAF1,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.04 OrthoFinder output from all 47 species
Spa_g06701 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Spa_g10709 ATCAF1, CAF1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g51985 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 890 973
IPR001890 RNA-binding_CRM 772 855
No external refs found!