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  5. Ala_g19488

Ala_g19488


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g19488
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Adi_g010601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04532 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g19188 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g34109 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g36490 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g39266 MEF19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04481 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19311 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26437 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g31336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0081.g038564 EMB2758 not classified & original description: CDS=1-2661 0.06 OrthoFinder output from all 47 species
Azfi_s0151.g053374 No alias ssDNA-binding protein *(OSB) & original description: CDS=217-2670 0.04 OrthoFinder output from all 47 species
Azfi_s0190.g056908 No alias not classified & original description: CDS=47-3490 0.05 OrthoFinder output from all 47 species
Azfi_s0257.g060586 No alias not classified & original description: CDS=1-3168 0.03 OrthoFinder output from all 47 species
Azfi_s0351.g066580 No alias not classified & original description: CDS=1-3804 0.05 OrthoFinder output from all 47 species
Cba_g19886 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29701 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35199 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G084700.1 VAC1, ECB2,... not classified & original description: pacid=50592179... 0.04 OrthoFinder output from all 47 species
Ceric.02G010800.1 Ceric.02G010800 not classified & original description: pacid=50584420... 0.04 OrthoFinder output from all 47 species
Ceric.04G002600.1 Ceric.04G002600 not classified & original description: pacid=50631990... 0.04 OrthoFinder output from all 47 species
Ceric.04G068300.1 CRR22, Ceric.04G068300 not classified & original description: pacid=50630217... 0.05 OrthoFinder output from all 47 species
Ceric.06G069000.1 Ceric.06G069000 not classified & original description: pacid=50620210... 0.04 OrthoFinder output from all 47 species
Ceric.07G028700.1 Ceric.07G028700 not classified & original description: pacid=50626039... 0.04 OrthoFinder output from all 47 species
Ceric.07G035900.1 Ceric.07G035900 not classified & original description: pacid=50625961... 0.05 OrthoFinder output from all 47 species
Ceric.09G065700.1 Ceric.09G065700 not classified & original description: pacid=50586915... 0.04 OrthoFinder output from all 47 species
Ceric.11G040900.1 Ceric.11G040900 not classified & original description: pacid=50596742... 0.06 OrthoFinder output from all 47 species
Ceric.12G097500.1 Ceric.12G097500 not classified & original description: pacid=50601961... 0.04 OrthoFinder output from all 47 species
Ceric.13G039400.1 Ceric.13G039400 not classified & original description: pacid=50635903... 0.05 OrthoFinder output from all 47 species
Ceric.17G003100.1 Ceric.17G003100 not classified & original description: pacid=50617164... 0.05 OrthoFinder output from all 47 species
Ceric.1Z048400.1 Ceric.1Z048400 not classified & original description: pacid=50571131... 0.05 OrthoFinder output from all 47 species
Ceric.22G051900.1 Ceric.22G051900 not classified & original description: pacid=50614015... 0.05 OrthoFinder output from all 47 species
Ceric.23G048800.1 Ceric.23G048800 not classified & original description: pacid=50611258... 0.07 OrthoFinder output from all 47 species
Ceric.26G017800.1 Ceric.26G017800 not classified & original description: pacid=50599016... 0.05 OrthoFinder output from all 47 species
Ceric.26G057900.1 CRR22, Ceric.26G057900 not classified & original description: pacid=50598962... 0.05 OrthoFinder output from all 47 species
Ceric.28G055900.1 Ceric.28G055900 not classified & original description: pacid=50569676... 0.05 OrthoFinder output from all 47 species
Ceric.33G002700.1 Ceric.33G002700 not classified & original description: pacid=50606600... 0.04 OrthoFinder output from all 47 species
Ceric.34G069900.1 Ceric.34G069900 not classified & original description: pacid=50624195... 0.05 OrthoFinder output from all 47 species
Ceric.37G004200.1 Ceric.37G004200 not classified & original description: pacid=50616137... 0.04 OrthoFinder output from all 47 species
Ceric.38G032700.1 Ceric.38G032700 not classified & original description: pacid=50579462... 0.04 OrthoFinder output from all 47 species
Ceric.39G053500.1 Ceric.39G053500 not classified & original description: pacid=50582600... 0.05 OrthoFinder output from all 47 species
Dac_g09764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26858 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g35980 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
GSVIVT01036975001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.05 OrthoFinder output from all 47 species
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species
Gb_21443 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.06 OrthoFinder output from all 47 species
Gb_33693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_36806 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
LOC_Os01g62910.1 CRR2, LOC_Os01g62910 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
Len_g05445 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_31170g0010 CRR22 RNA editing factor (MEF19) 0.02 OrthoFinder output from all 47 species
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_4438g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_94165g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Msp_g23175 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g26329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011483 No alias not classified & original description: CDS=1-2124 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011851 OTP84 not classified & original description: CDS=1-2175 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013695 No alias not classified & original description: CDS=1-2949 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020410 No alias not classified & original description: CDS=1-2748 0.03 OrthoFinder output from all 47 species
Sam_g07175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g21254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g082450.1.1 Solyc09g082450 RNA editing factor (YS1) 0.04 OrthoFinder output from all 47 species
Spa_g09809 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g12338 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g12611 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g14608 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g15181 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g20091 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23700 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26814 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g31130 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47251 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05629 OTP84 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g11710 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17143 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g17460 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26504 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g26533 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26899 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30441 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e015440_P001 CRR22, Zm00001e015440 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Zm00001e020442_P001 Zm00001e020442 Pentatricopeptide repeat-containing protein At4g21300... 0.04 OrthoFinder output from all 47 species
Zm00001e041048_P001 OTP86, Zm00001e041048 RNA editing factor (OTP86) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 156 180
IPR002885 Pentatricopeptide_repeat 459 481
IPR002885 Pentatricopeptide_repeat 560 581
IPR002885 Pentatricopeptide_repeat 80 128
IPR002885 Pentatricopeptide_repeat 181 228
IPR002885 Pentatricopeptide_repeat 485 531
IPR002885 Pentatricopeptide_repeat 384 429
IPR002885 Pentatricopeptide_repeat 283 329
IPR002885 Pentatricopeptide_repeat 586 633
No external refs found!