Lfl_g01887


Description : not classified & original description: none


Gene families : OG0004023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004023_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g01887

Target Alias Description ECC score Gene Family Method Actions
Adi_g114117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05987 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g08020 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g25946 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.23G078700.1 Ceric.23G078700 not classified & original description: pacid=50610433... 0.05 OrthoFinder output from all 47 species
Dac_g23808 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g09268 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g29928 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g14876 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g15440 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g06340 CRM3, HCF152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14407 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g19507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10297 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42843 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006174 No alias not classified & original description: CDS=16-1263 0.04 OrthoFinder output from all 47 species
Sam_g15789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37245 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 330 353
IPR002885 Pentatricopeptide_repeat 147 198
IPR002885 Pentatricopeptide_repeat 244 291
IPR002885 Pentatricopeptide_repeat 362 410
No external refs found!