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  5. Lfl_g01859

Lfl_g01859 (PDS3, PDS, PDE226)


Aliases : PDS3, PDS, PDE226

Description : phytoene desaturase *(PDS) & original description: none


Gene families : OG0006245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g01859

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00071060 PDS3, PDS,... Secondary metabolism.terpenoids.terpenoid... 0.03 OrthoFinder output from all 47 species
AT4G14210 PDS3, PDS, PDE226 phytoene desaturase 3 0.03 OrthoFinder output from all 47 species
Aev_g13760 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g09707 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene08410.t1 PDS3, PDS,... phytoene desaturase *(PDS) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0047.g030344 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: CDS=138-1889 0.03 OrthoFinder output from all 47 species
Cba_g36080 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.08G066500.1 PDS3, PDS,... phytoene desaturase *(PDS) & original description:... 0.05 OrthoFinder output from all 47 species
Cre12.g509650 PDS3, PDS, PDE226 Secondary metabolism.terpenoids.terpenoid... 0.03 OrthoFinder output from all 47 species
Dac_g11776 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g01529 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23615 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01016650001 PDS3, PDS, PDE226 Secondary metabolism.terpenoids.terpenoid... 0.03 OrthoFinder output from all 47 species
LOC_Os03g08570.1 PDS3, PDS,... phytoene desaturase (PDS) 0.07 OrthoFinder output from all 47 species
Mp8g14330.1 PDS3, PDS, PDE226 phytoene desaturase (PDS) 0.02 OrthoFinder output from all 47 species
Pnu_g17790 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31631 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.02 OrthoFinder output from all 47 species
Smo232430 PDS3, PDS, PDE226 Secondary metabolism.terpenoids.terpenoid... 0.07 OrthoFinder output from all 47 species
Zm00001e000618_P002 PDS3, PDS,... phytoene desaturase (PDS) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 117 558
No external refs found!