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  5. Ala_g15103

Ala_g15103 (XRN3, AtXRN3)


Aliases : XRN3, AtXRN3

Description : exoribonuclease *(RAT1/XRN2) & original description: none


Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g15103
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00046450 EIN5, AIN1,... RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00024460 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00491p00000370 XRN3, AtXRN3,... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT1G54490 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease 4 0.07 OrthoFinder output from all 47 species
AT1G75660 XRN3, AtXRN3 5'-3' exoribonuclease 3 0.02 OrthoFinder output from all 47 species
AT5G42540 XRN2, AtXRN2 exoribonuclease 2 0.03 OrthoFinder output from all 47 species
Adi_g056473 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26061 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene15159.t1 XRN3, AtXRN3,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene67536.t1 XRN3, AtXRN3,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene67537.t1 EIN5, AIN1,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0149.g053258 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: CDS=205-3336 0.08 OrthoFinder output from all 47 species
Cba_g15355 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16564 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G061100.1 EIN5, AIN1,... exoribonuclease *(XRN4) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.08G059400.1 EIN5, AIN1,... exoribonuclease *(XRN4) & original description:... 0.1 OrthoFinder output from all 47 species
Ceric.30G049400.1 XRN3, AtXRN3,... exoribonuclease *(RAT1/XRN2) & original description:... 0.04 OrthoFinder output from all 47 species
Cre06.g280050 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre16.g679900 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dde_g42410 XRN3, AtXRN3 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05069 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06196 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01009879001 XRN3, AtXRN3 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Gb_09607 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g58060.1 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.08 OrthoFinder output from all 47 species
Lfl_g06753 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g19229 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.08 OrthoFinder output from all 47 species
MA_10430844g0010 XRN3, AtXRN3 exoribonuclease (RAT1/XRN2) 0.02 OrthoFinder output from all 47 species
Msp_g13176 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.12 OrthoFinder output from all 47 species
Ore_g19704 EIN5, AIN1, XRN4, ATXRN4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19708 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g40493 XRN3, AtXRN3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012142 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: CDS=244-3387 0.03 OrthoFinder output from all 47 species
Sam_g12064 No alias exoribonuclease *(RAT1/XRN2) & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g38845 No alias exoribonuclease *(XRN4) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g081280.3.1 XRN3, AtXRN3,... exoribonuclease (RAT1/XRN2) 0.06 OrthoFinder output from all 47 species
Tin_g46210 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011879_P001 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR004859 Xrn1_N 1 253
IPR041412 Xrn1_helical 327 822
No external refs found!