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  5. Ala_g14571

Ala_g14571


Description : component *(RINGLET/RLT) of ISWI chromatin remodeling complex & original description: none


Gene families : OG0001590 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001590_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g14571
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AT5G44180 No alias Homeodomain-like transcriptional regulator 0.03 OrthoFinder output from all 47 species
Als_g14029 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Aob_g21500 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Ceric.16G048200.1 HB-1, Ceric.16G048200 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Ceric.38G016400.1 Ceric.38G016400 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Cre03.g174500 No alias Homeobox-DDT domain protein RLT1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Ehy_g16445 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.05 OrthoFinder output from all 47 species
GSVIVT01020605001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01021113001 HB-1 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
LOC_Os05g48820.1 LOC_Os05g48820 HOX-like transcription factor 0.05 OrthoFinder output from all 47 species
MA_2434g0010 No alias HOX-like transcription factor 0.04 OrthoFinder output from all 47 species
Mp1g04480.1 No alias HOX-like transcription factor 0.02 OrthoFinder output from all 47 species
Pir_g65963 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Zm00001e028032_P001 Zm00001e028032 HOX-like transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR018501 DDT_dom 592 647
IPR028941 WHIM2_dom 1152 1224
IPR001356 Homeobox_dom 15 70
IPR028942 WHIM1_dom 992 1033
IPR007759 Asxl_HARE-HTH 775 841
No external refs found!