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  5. Ala_g14438

Ala_g14438 (CCB3, atylmg3, YLMG3)


Aliases : CCB3, atylmg3, YLMG3

Description : assembly factor CCB3 of CCB cytochrome b6 maturation system (system IV) & original description: none


Gene families : OG0006561 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006561_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g14438
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AT5G36120 CCB3, atylmg3, YLMG3 cofactor assembly, complex C (B6F) 0.03 OrthoFinder output from all 47 species
Aev_g00480 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.02 OrthoFinder output from all 47 species
Aob_g12752 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.03 OrthoFinder output from all 47 species
Azfi_s0318.g064397 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019313 CCB3, atylmg3, YLMG3 assembly factor CCB3 of CCB cytochrome b6 maturation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004392 heme oxygenase (decyclizing) activity IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006788 heme oxidation IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
CC GO:0032299 ribonuclease H2 complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003425 CCB3/YggT 137 205
No external refs found!