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  5. Ala_g13919

Ala_g13919 (SR30, ATSRP30, At-SR30)


Aliases : SR30, ATSRP30, At-SR30

Description : RNA splicing factor *(SR30/34) & original description: none


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g13919

Target Alias Description ECC score Gene Family Method Actions
Als_g11310 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20395 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g12937 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22439.t1 SR30, ATSRP30,... RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000857.20 At-SR34, SRP34,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Nbi_g09836 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g19708 No alias RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g099810.3.1 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 113 175
IPR000504 RRM_dom 8 75
No external refs found!