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  5. Ala_g13053

Ala_g13053 (PRHA)


Aliases : PRHA

Description : PHD-type transcription factor & original description: none


Gene families : OG0002217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002217_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g13053
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272780 HAT3.1,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
Azfi_s0110.g045488 PRHA PHD-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G036500.1 PRHA, Ceric.21G036500 PHD-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01010860001 PRHA RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
LOC_Os06g12400.1 HAT3.1, LOC_Os06g12400 transcription factor (PHD) 0.02 OrthoFinder output from all 47 species
Ore_g29974 PRHA PHD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 171 225
IPR001356 Homeobox_dom 440 486
No external refs found!