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  5. Ala_g12131

Ala_g12131


Description : 16S-rRNA maturation factor *(RBF1) & original description: none


Gene families : OG0006622 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006622_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g12131
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AT4G34730 No alias ribosome-binding factor A family protein 0.02 OrthoFinder output from all 47 species
Adi_g063104 No alias 16S-rRNA maturation factor *(RBF1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08614 No alias 16S-rRNA maturation factor *(RBF1) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07697 No alias 16S-rRNA maturation factor *(RBF1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g36176 No alias 16S-rRNA maturation factor *(RBF1) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g10039 No alias 16S-rRNA maturation factor *(RBF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.29G076100.1 Ceric.29G076100 16S-rRNA maturation factor *(RBF1) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.63 No alias Probable ribosome-binding factor A, chloroplastic... 0.02 OrthoFinder output from all 47 species
Dcu_g22214 No alias 16S-rRNA maturation factor *(RBF1) & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g07524 No alias 16S-rRNA maturation factor *(RBF1) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g01125 No alias 16S-rRNA maturation factor *(RBF1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_191090g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g03290.1 No alias Probable ribosome-binding factor A, chloroplastic... 0.02 OrthoFinder output from all 47 species
Nbi_g07187 No alias 16S-rRNA maturation factor *(RBF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g15385 No alias 16S-rRNA maturation factor *(RBF1) & original description: none 0.02 OrthoFinder output from all 47 species
Smo48536 No alias Probable ribosome-binding factor A, chloroplastic... 0.04 OrthoFinder output from all 47 species
Solyc01g110550.3.1 Solyc01g110550 Probable ribosome-binding factor A, chloroplastic... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000238 RbfA 46 163
No external refs found!