AMTR_s00019p00220910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.279

Description : Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana


Gene families : OG_01_0001060 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001060_tree ,
OG_02_0001470 (LandPlants) Phylogenetic Tree(s): OG_02_0001470_tree ,
OG_03_0003417 (SeedPlants) Phylogenetic Tree(s): OG_03_0003417_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00220910
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT3G09650 CRM3, HCF152 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.04 Archaeplastida
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.1 Archaeplastida
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 Archaeplastida
Solyc01g088750.3.1 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 Archaeplastida
Solyc04g008410.3.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 Archaeplastida
Solyc09g007320.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.04 Archaeplastida
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 LandPlants
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 LandPlants
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.04 LandPlants
LOC_Os07g31310.1 No alias Pentatricopeptide repeat-containing protein At4g17616... 0.03 LandPlants
LOC_Os10g28665.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
MA_118036g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.07 LandPlants
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 LandPlants
Solyc01g088750.3.1 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 LandPlants
Solyc04g008410.3.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.04 LandPlants
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 SeedPlants
LOC_Os10g28665.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 SeedPlants
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 SeedPlants
Solyc04g008410.3.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 551 597
IPR002885 Pentatricopeptide_repeat 415 440
IPR002885 Pentatricopeptide_repeat 446 475
No external refs found!