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  5. Ala_g11735

Ala_g11735 (ARF6)


Aliases : ARF6

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g11735
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Adi_g088539 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01027166001 ARF11 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
LOC_Os08g40900.1 ARF19, IAA22,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Pnu_g25160 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08676 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo115320 ARF6 Auxin response factor 25 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 261 343
IPR003340 B3_DNA-bd 134 235
IPR033389 AUX/IAA_dom 957 1041
No external refs found!