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  5. Ala_g11471

Ala_g11471 (VCS)


Aliases : VCS

Description : scaffold component *(VCS) of mRNA decapping complex & original description: none


Gene families : OG0001030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001030_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g11471
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00131900 VCS,... RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
AT3G13300 VCS Transducin/WD40 repeat-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g055830 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Aob_g03608 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g05835 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g11716 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Dde_g10360 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Ehy_g07954 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01006976001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
GSVIVT01014783001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
Gb_04906 VCS scaffold component VCS of mRNA decapping complex 0.04 OrthoFinder output from all 47 species
Lfl_g18274 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
MA_10427487g0020 VCS Varicose-related protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10431534g0010 VCR Varicose-related protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10431534g0020 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_10431534g0030 VCS scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
MA_39123g0010 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g14526 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Msp_g26178 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Nbi_g03858 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Pir_g02589 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Ppi_g03283 VCS scaffold component *(VCS) of mRNA decaPping complex &... 0.02 OrthoFinder output from all 47 species
Solyc07g065950.4.1 VCS, Solyc07g065950 scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
Solyc10g005920.4.1 VCS, Solyc10g005920 scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
Spa_g07074 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Spa_g10517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17551 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e015689_P001 VCS, Zm00001e015689 scaffold component VCS of mRNA decapping complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
CC GO:0000145 exocyst IEP HCCA
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 218 529
No external refs found!