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  5. Ala_g10980

Ala_g10980 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g10980

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00067490 PUM1, APUM1,... Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00012p00251030 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g023994 PUM5, APUM5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06713 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_31285 APUM2, PUM2 Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_39566 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e016242_P002 PUM1, APUM1,... Pumilio homolog 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 852 887
IPR001313 Pumilio_RNA-bd_rpt 708 742
IPR001313 Pumilio_RNA-bd_rpt 744 776
IPR001313 Pumilio_RNA-bd_rpt 822 847
IPR001313 Pumilio_RNA-bd_rpt 780 813
IPR001313 Pumilio_RNA-bd_rpt 890 919
IPR012940 NABP 325 703
No external refs found!