Lfl_g01030 (RPL4)

Aliases : RPL4

Description : component *(uL4c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0007896 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007896_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g01030

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00221060	RPL4,...	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
AT1G07320	RPL4	ribosomal protein L4	0.1	OrthoFinder output from all 47 species
Adi_g078975	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ala_g05983	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Als_g20889	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aob_g13415	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aop_g05120	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aspi01Gene15325.t1	RPL4, Aspi01Gene15325	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0056.g034220	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cba_g34049	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.09G057300.1	RPL4, Ceric.09G057300	component *(uL4c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Cre11.g479500	RPL4	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
Dac_g21787	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Dcu_g06106	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g06392	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g02216	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01024788001	RPL4	50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum	0.06	OrthoFinder output from all 47 species
Gb_03469	RPL4	component psRPL4 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
LOC_Os03g15870.1	RPL4, LOC_Os03g15870	component psRPL4 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Len_g13257	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
MA_2315568g0010	RPL4	50S ribosomal protein L4, chloroplastic OS=Nicotiana...	0.04	OrthoFinder output from all 47 species
MA_9845329g0010	RPL4	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp1g18940.1	RPL4	component psRPL4 of large ribosomal subunit proteome	0.14	OrthoFinder output from all 47 species
Msp_g19825	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Nbi_g14226	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ore_g08496	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pir_g19924	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ppi_g15929	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Solyc07g061900.3.1	RPL4, Solyc07g061900	component psRPL4 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Spa_g08728	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Tin_g24110	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Zm00001e001165_P001	RPL4, Zm00001e001165	component psRPL4 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002100	tRNA wobble adenosine to inosine editing	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004000	adenosine deaminase activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
BP	GO:0006382	adenosine to inosine editing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008251	tRNA-specific adenosine deaminase activity	IEP	HCCA
MF	GO:0008883	glutamyl-tRNA reductase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
BP	GO:0016553	base conversion or substitution editing	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
MF	GO:0019239	deaminase activity	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
MF	GO:0051920	peroxiredoxin activity	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002136	Ribosomal_L4/L1e	91	271

External Links

No external refs found!

Lfl_g01030 (RPL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation