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  5. Ala_g09715

Ala_g09715


Description : not classified & original description: none


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g09715

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00116200 evm_27.TU.AmTr_v1... KH domain-containing protein HEN4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00033p00221750 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
AMTR_s00092p00116010 evm_27.TU.AmTr_v1... KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT5G15270 No alias RNA-binding KH domain-containing protein 0.03 OrthoFinder output from all 47 species
AT5G64390 HEN4 RNA-binding KH domain-containing protein 0.06 OrthoFinder output from all 47 species
Adi_g010493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g017897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g040691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054731 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g074054 HEN4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075813 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g108369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g128615 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07964 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Als_g03129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05589 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g25451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04310 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g04404 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04253 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.05 OrthoFinder output from all 47 species
Aop_g29218 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene68976.t1 Aspi01Gene68976 regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Cba_g03276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07339 HEN4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12024 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g12254 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.06 OrthoFinder output from all 47 species
Cba_g17642 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g71670 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.32G061200.1 Ceric.32G061200 not classified & original description: pacid=50597564... 0.02 OrthoFinder output from all 47 species
Dac_g16071 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Dac_g20278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12897 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g24061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011439001 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01031037001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_31686 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Gb_38220 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
LOC_Os06g23460.1 LOC_Os06g23460 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
LOC_Os09g32300.1 LOC_Os09g32300 KH domain-containing protein HEN4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g00705 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04773 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04900 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10433640g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_12604g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
MA_6622g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Msp_g10485 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g03216 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g03833 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g06520 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g06772 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10012 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g18548 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g21139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g21684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25271 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40850 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00616 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g09567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10935 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g37389 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g38350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13999 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Pnu_g14000 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ppi_g01057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g10760 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11931 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g12504 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13844 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Sam_g16383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g106020.3.1 HEN4, Solyc01g106020 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Solyc02g067210.3.1 Solyc02g067210 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc03g034200.3.1 Solyc03g034200 RNA-binding KH domain-containing protein RCF3... 0.06 OrthoFinder output from all 47 species
Solyc08g048500.3.1 Solyc08g048500 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g08106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22547 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53383 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g02804 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e004486_P005 Zm00001e004486 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e037033_P001 Zm00001e037033 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Zm00001e039986_P003 Zm00001e039986 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 44 97
IPR004088 KH_dom_type_1 338 388
IPR004088 KH_dom_type_1 623 685
IPR004088 KH_dom_type_1 178 245
IPR004088 KH_dom_type_1 420 485
No external refs found!