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  5. Ala_g09581

Ala_g09581


Description : regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway & original description: none


Gene families : OG0005389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005389_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g09581
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AT5G65900 No alias DEA(D/H)-box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Lfl_g27281 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Pir_g60443 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 208 379
IPR001650 Helicase_C 421 524
IPR025313 DUF4217 566 626
No external refs found!