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  5. Lfl_g00940

Lfl_g00940 (XCT)


Aliases : XCT

Description : regulatory protein *(XCT) of light-dependent circadian clock & original description: none


Gene families : OG0005170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g00940

Target Alias Description ECC score Gene Family Method Actions
Ceric.19G068400.1 XCT, Ceric.19G068400 regulatory protein *(XCT) of light-dependent circadian... 0.03 OrthoFinder output from all 47 species
Pir_g16300 XCT regulatory protein *(XCT) of light-dependent circadian... 0.02 OrthoFinder output from all 47 species
Solyc01g111140.3.1 XCT, Solyc01g111140 light-dependent circadian clock regulator (XCT) 0.02 OrthoFinder output from all 47 species
Zm00001e010242_P001 XCT, Zm00001e010242 light-dependent circadian clock regulator (XCT) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR007005 XAP5 87 331
No external refs found!