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  5. Ala_g08921

Ala_g08921 (SMP1)


Aliases : SMP1

Description : splicing factor *(SMP) & original description: none


Gene families : OG0003342 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003342_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g08921

Target Alias Description ECC score Gene Family Method Actions
Als_g03712 SMP2 splicing factor *(SMP) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12863 SMP1 splicing factor *(SMP) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G023900.1 SMP1, Ceric.31G023900 splicing factor *(SMP) & original description:... 0.03 OrthoFinder output from all 47 species
Cre03.g194000 SMP2 Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica 0.02 OrthoFinder output from all 47 species
GSVIVT01027813001 SMP1 Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica 0.03 OrthoFinder output from all 47 species
Len_g19662 SMP1 splicing factor *(SMP) & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g12350.1 SMP1 Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Ore_g04906 SMP1 splicing factor *(SMP) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g47310 No alias splicing factor *(SMP) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g072570.3.1 SMP1, Solyc09g072570 Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR021715 Slu7_dom 136 405
No external refs found!