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  5. Ala_g08112

Ala_g08112


Description : histone demethylase *(KDM5) & original description: none


Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g08112
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.05 OrthoFinder output from all 47 species
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.09 OrthoFinder output from all 47 species
Adi_g055868 No alias histone demethylase *(KDM5) & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g056689 PKDM7D not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107372 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g15008 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05144 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62631 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13634 PKDM7D histone demethylase *(PKDM7) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g36846 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28386.t1 Aspi01Gene28386 histone demethylase *(KDM5) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene68630.t1 PKDM7D, Aspi01Gene68630 histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01359 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G024900.1 Ceric.01G024900 histone demethylase *(KDM5) & original description:... 0.09 OrthoFinder output from all 47 species
Ceric.09G000100.1 PKDM7D, Ceric.09G000100 histone demethylase *(PKDM7) & original description:... 0.05 OrthoFinder output from all 47 species
Cre03.g169950 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
Dcu_g07179 No alias histone demethylase *(KDM5) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g14428 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08688 PKDM7D histone demethylase *(PKDM7) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g21285 PKDM7B, JMJ14 histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.08 OrthoFinder output from all 47 species
GSVIVT01023517001 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.09 OrthoFinder output from all 47 species
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
Gb_27431 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
LOC_Os05g10770.1 PKDM7D, LOC_Os05g10770 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
Len_g14189 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18977 PKDM7D histone demethylase *(PKDM7) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04296 No alias histone demethylase *(KDM5) & original description: none 0.13 OrthoFinder output from all 47 species
MA_10436180g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10436538g0010 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
MA_91656g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_97089g0010 PKDM7D Putative lysine-specific demethylase JMJ16... 0.02 OrthoFinder output from all 47 species
Mp6g20340.1 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Msp_g13349 No alias histone demethylase *(KDM5) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g38705 No alias histone demethylase *(KDM5) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g17259 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17312 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15994 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58500 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07515 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01426 No alias histone demethylase *(KDM5) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013848 No alias histone demethylase *(KDM5) & original description: CDS=319-5874 0.03 OrthoFinder output from all 47 species
Sam_g11634 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc06g008490.3.1 PKDM7D, Solyc06g008490 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Spa_g17545 No alias histone demethylase *(KDM5) & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g12700 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e030938_P001 PKDM7D, Zm00001e030938 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR013637 Lys_sp_deMease-like_dom 960 1149
IPR013637 Lys_sp_deMease-like_dom 730 957
IPR013637 Lys_sp_deMease-like_dom 1156 1426
IPR003347 JmjC_dom 416 532
IPR003349 JmjN 31 64
IPR004198 Znf_C5HC2 626 678
IPR001606 ARID_dom 101 189
IPR019787 Znf_PHD-finger 244 290
IPR019787 Znf_PHD-finger 1737 1796
No external refs found!