1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g00814

Lfl_g00814


Description : not classified & original description: none


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g00814

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0010.g012121 No alias not classified & original description: CDS=1-669 0.02 OrthoFinder output from all 47 species
Cba_g17337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04581 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05243 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35381 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013489 No alias not classified & original description: CDS=30-617 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 169 184
IPR001878 Znf_CCHC 132 147
IPR001878 Znf_CCHC 87 101
IPR001878 Znf_CCHC 150 164
IPR001878 Znf_CCHC 105 119
IPR001878 Znf_CCHC 49 64
IPR001878 Znf_CCHC 219 235
IPR001878 Znf_CCHC 200 214
IPR001878 Znf_CCHC 67 82
No external refs found!