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  5. Ala_g07833

Ala_g07833 (UBP1B)


Aliases : UBP1B

Description : stress granule assembly factor *(UBP1) & original description: none


Gene families : OG0002014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g07833
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0743.g084783 UBP1B stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.24G074900.1 Ceric.24G074900 stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Dde_g09668 UBP1B stress granule assembly factor *(UBP1) & original... 0.04 OrthoFinder output from all 47 species
Len_g21450 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Msp_g16815 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07308 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Pp3c2_9144V3.1 UBP1B, Pp3c2_9144 oligouridylate binding protein 1B 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0009975 cyclase activity IEP HCCA
MF GO:0009976 tocopherol cyclase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 216 280
IPR000504 RRM_dom 418 483
IPR000504 RRM_dom 301 370
No external refs found!