Ala_g07767

Description : SSU processome assembly factor *(UTP21) & original description: none

Gene families : OG0005878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005878_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g07767

Target	Alias	Description	ECC score	Gene Family Method
AT4G04940	No alias	transducin family protein / WD-40 repeat family protein	0.03	OrthoFinder output from all 47 species
Ceric.19G039200.1	Ceric.19G039200	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
Cre10.g466250	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dcu_g02020	No alias	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
LOC_Os06g43690.1	LOC_Os06g43690	SSU processome assembly factor (UTP21)	0.02	OrthoFinder output from all 47 species
Mp3g13780.1	No alias	SSU processome assembly factor (UTP21)	0.03	OrthoFinder output from all 47 species
Solyc01g087670.3.1	Solyc01g087670	SSU processome assembly factor (UTP21)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	470	503
IPR001680	WD40_repeat	549	586
IPR024977	Apc4_WD40_dom	190	278
IPR007319	SSU_processome_Utp21	693	910

External Links

No external refs found!