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  5. Lfl_g00770

Lfl_g00770


Description : component *(eS4) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0000987 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000987_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g00770

Target Alias Description ECC score Gene Family Method Actions
Adi_g088324 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Als_g61453 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Aop_g02046 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Ceric.01G129200.1 Ceric.01G129200 component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Ceric.10G002500.1 Ceric.10G002500 component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Len_g50156 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Pir_g12385 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Sam_g05357 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Sam_g27349 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Spa_g05578 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Spa_g05579 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Spa_g23890 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006873 cellular monoatomic ion homeostasis IEP HCCA
BP GO:0006874 cellular calcium ion homeostasis IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0030003 cellular monoatomic cation homeostasis IEP HCCA
BP GO:0032469 endoplasmic reticulum calcium ion homeostasis IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055074 calcium ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0055082 cellular chemical homeostasis IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
InterPro domains Description Start Stop
IPR013843 Ribosomal_S4e_N 3 39
IPR032277 40S_S4_C 212 256
IPR013845 Ribosomal_S4e_central_region 95 169
IPR005824 KOW 178 210
IPR002942 S4_RNA-bd 43 90
No external refs found!