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  5. Ala_g05621

Ala_g05621


Description : component *(S2Lb/SWD2) of COMPASS histone trimethylation complex & original description: none


Gene families : OG0002761 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002761_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g05621

Target Alias Description ECC score Gene Family Method Actions
AT5G66240 No alias Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
Lfl_g04548 No alias component *(S2Lb/SWD2) of COMPASS histone trimethylation... 0.04 OrthoFinder output from all 47 species
Pir_g52178 No alias component *(S2Lb/SWD2) of COMPASS histone trimethylation... 0.04 OrthoFinder output from all 47 species
Pir_g60875 No alias component *(S2Lb/SWD2) of COMPASS histone trimethylation... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011307 No alias not classified & original description: CDS=188-952 0.03 OrthoFinder output from all 47 species
Sam_g19764 No alias component *(S2Lb/SWD2) of COMPASS histone trimethylation... 0.02 OrthoFinder output from all 47 species
Smo106210 No alias Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 30 59
IPR001680 WD40_repeat 111 146
IPR001680 WD40_repeat 246 277
No external refs found!