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  5. Ala_g05070

Ala_g05070


Description : not classified & original description: none


Gene families : OG0000978 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000978_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g05070
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00035310 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00089p00172750 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G48090 No alias calcium-dependent lipid-binding family protein 0.09 OrthoFinder output from all 47 species
AT4G17140 No alias pleckstrin homology (PH) domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g011982 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g17458 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g19181 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g22914 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g32428 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene42699.t1 Aspi01Gene42699 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene42701.t2 Aspi01Gene42701 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42701.t3 Aspi01Gene42701 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene42703.t1 Aspi01Gene42703 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55584.t1 Aspi01Gene55584 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene55586.t1 Aspi01Gene55586 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene55587.t1 Aspi01Gene55587 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene55589.t1 Aspi01Gene55589 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene55590.t1 Aspi01Gene55590 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0009.g011871 No alias not classified & original description: CDS=1-5496 0.02 OrthoFinder output from all 47 species
Azfi_s0185.g056668 No alias not classified & original description: CDS=100-1869 0.06 OrthoFinder output from all 47 species
Ceric.09G071300.1 Ceric.09G071300 not classified & original description: pacid=50588528... 0.08 OrthoFinder output from all 47 species
Ceric.09G071400.1 Ceric.09G071400 not classified & original description: pacid=50587640... 0.04 OrthoFinder output from all 47 species
Ceric.21G079300.1 Ceric.21G079300 not classified & original description: pacid=50602615... 0.06 OrthoFinder output from all 47 species
Dcu_g26863 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ehy_g19066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01013268001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01013270001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01017643001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_15429 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os02g27110.1 LOC_Os02g27110 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g27130.1 LOC_Os02g27130 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g08664 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g03526 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g12023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25510 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_10343795g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10426328g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_10428265g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_10432463g0010 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
MA_119498g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_295252g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_36612g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_74056g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_901094g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp3g08780.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g07570.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g07580.2 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g38228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018244 No alias not classified & original description: CDS=306-11297 0.04 OrthoFinder output from all 47 species
Sam_g17487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g009350.2.1 Solyc09g009350 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc09g009370.4.1 Solyc09g009370 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Spa_g09459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17786 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR009291 Vps62 2253 2395
IPR009291 Vps62 2015 2172
IPR000008 C2_dom 2646 2759
IPR010482 Peroxin 2923 3039
IPR009543 VPS13_VAB 3299 3611
IPR031646 VPS13_extend_chorein 141 385
IPR026854 VPS13-like_N 2 115
IPR031642 VPS13_mid_RBG 581 819
No external refs found!