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  5. Ala_g04725

Ala_g04725


Description : not classified & original description: none


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g04725
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AT1G76950 PRAF1 Regulator of chromosome condensation (RCC1) family with... 0.05 OrthoFinder output from all 47 species
AT5G12350 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 OrthoFinder output from all 47 species
Aspi01Gene24590.t1 Aspi01Gene24590 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71481.t1 Aspi01Gene71481 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001675001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Gb_13554 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
LOC_Os05g01610.1 PRAF1, LOC_Os05g01610 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Mp1g24610.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
Ppi_g13544 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g065120.3.1 Solyc11g065120 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e028276_P001 Zm00001e028276 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e028312_P001 Zm00001e028312 PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 825 879
IPR000306 Znf_FYVE 419 485
IPR000408 Reg_chr_condens 92 140
IPR000408 Reg_chr_condens 199 247
IPR000408 Reg_chr_condens 144 195
IPR000408 Reg_chr_condens 262 311
IPR000408 Reg_chr_condens 368 415
IPR000408 Reg_chr_condens 314 363
IPR027988 BRX_N 675 704
No external refs found!