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  5. Ala_g04653

Ala_g04653 (AMY1, ATAMY1)


Aliases : AMY1, ATAMY1

Description : alpha amylase & original description: none


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g04653
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Aev_g09857 AMY1, ATAMY1 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G047800.1 AMY3, ATAMY3,... alpha amylase & original description: pacid=50620852... 0.04 OrthoFinder output from all 47 species
GSVIVT01008714001 AMY2, ATAMY2 Carbohydrate metabolism.starch... 0.01 OrthoFinder output from all 47 species
LOC_Os06g49970.2 AMY1, ATAMY1,... alpha amylase 0.02 OrthoFinder output from all 47 species
MA_8527195g0010 AMY3, ATAMY3 Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pir_g20513 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008273_P002 AMY2, ATAMY2,... alpha amylase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004788 thiamine diphosphokinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009229 thiamine diphosphate biosynthetic process IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
BP GO:0042357 thiamine diphosphate metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 459 519
IPR006047 Glyco_hydro_13_cat_dom 144 438
No external refs found!