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  5. Ala_g04595

Ala_g04595 (PTAC3)


Aliases : PTAC3

Description : cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3) & original description: none


Gene families : OG0004426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004426_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g04595
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AT3G04260 PTAC3 plastid transcriptionally active 3 0.03 OrthoFinder output from all 47 species
Aev_g41836 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Als_g09362 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.04 OrthoFinder output from all 47 species
Cba_g34156 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Ceric.39G010500.1 PTAC3, Ceric.39G010500 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.04 OrthoFinder output from all 47 species
Ehy_g16824 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
GSVIVT01026351001 PTAC3 RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
LOC_Os10g32540.1 PTAC3, LOC_Os10g32540 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Len_g01904 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.05 OrthoFinder output from all 47 species
MA_7597000g0010 PTAC3 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
MA_86107g0010 PTAC3 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g16208 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.04 OrthoFinder output from all 47 species
Ppi_g02363 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.02 OrthoFinder output from all 47 species
Solyc04g050540.4.1 PTAC3, Solyc04g050540 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Spa_g08017 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Zm00001e004642_P001 PTAC3, Zm00001e004642 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003034 SAP_dom 647 678
No external refs found!