Ala_g04107 (FIB2, ATFIB2)

Aliases : FIB2, ATFIB2

Description : methyltransferase component *(Nop1/fibrillarin) of snoRNP rRNA methylation complex & original description: none

Gene families : OG0004335 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004335_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g04107

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00218020	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.04	OrthoFinder output from all 47 species
AMTR_s00099p00093470	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.03	OrthoFinder output from all 47 species
AT4G25630	FIB2, ATFIB2	fibrillarin 2	0.05	OrthoFinder output from all 47 species
AT5G52470	FIB1, ATFIB1,...	fibrillarin 1	0.06	OrthoFinder output from all 47 species
Ceric.01G068400.1	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.04	OrthoFinder output from all 47 species
GSVIVT01028887001	FIB1, ATFIB1,...	RNA processing.RNA modification.rRNA/tRNA...	0.07	OrthoFinder output from all 47 species
Gb_33899	FIB2, ATFIB2	methyltransferase component Nop1/fibrillarin of snoRNP...	0.07	OrthoFinder output from all 47 species
LOC_Os02g57590.1	FIB2, ATFIB2,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	OrthoFinder output from all 47 species
LOC_Os05g08360.1	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	OrthoFinder output from all 47 species
MA_124463g0010	FIB2, ATFIB2	methyltransferase component Nop1/fibrillarin of snoRNP...	0.05	OrthoFinder output from all 47 species
Mp2g12880.1	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	OrthoFinder output from all 47 species
Pir_g60296	FIB1, ATFIB1,...	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Sam_g13274	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.06	OrthoFinder output from all 47 species
Solyc03g025270.3.1	FIB2, ATFIB2,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	OrthoFinder output from all 47 species
Spa_g31178	FIB2, ATFIB2	methyltransferase component *(Nop1/fibrillarin) of...	0.03	OrthoFinder output from all 47 species
Zm00001e023572_P001	FIB1, ATFIB1,...	methyltransferase component Nop1/fibrillarin of snoRNP...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000692	Fibrillarin	79	306

External Links

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Ala_g04107 (FIB2, ATFIB2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation