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  5. Ala_g02704

Ala_g02704 (TAF2)


Aliases : TAF2

Description : component *(TAF2) of TFIId basal transcription regulation complex & original description: none


Gene families : OG0004457 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004457_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g02704
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AT1G73960 TAF2 TBP-associated factor 2 0.03 OrthoFinder output from all 47 species
Adi_g057723 TAF2 component *(TAF2) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Aev_g12875 TAF2 component *(TAF2) of TFIId basal transcription... 0.04 OrthoFinder output from all 47 species
Aob_g17816 TAF2 component *(TAF2) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Aspi01Gene01152.t1 TAF2, Aspi01Gene01152 component *(TAF2) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Ceric.22G030300.1 TAF2, Ceric.22G030300 component *(TAF2) of TFIId basal transcription... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.29 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Cre13.g583500 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
Dcu_g02032 TAF2 component *(TAF2) of TFIId basal transcription... 0.05 OrthoFinder output from all 47 species
Dde_g05390 TAF2 component *(TAF2) of TFIId basal transcription... 0.06 OrthoFinder output from all 47 species
Ehy_g15470 TAF2 component *(TAF2) of TFIId basal transcription... 0.04 OrthoFinder output from all 47 species
GSVIVT01008230001 TAF2 RNA biosynthesis.RNA polymerase II-dependent... 0.06 OrthoFinder output from all 47 species
Len_g48844 TAF2 component *(TAF2) of TFIId basal transcription... 0.06 OrthoFinder output from all 47 species
Lfl_g09927 TAF2 component *(TAF2) of TFIId basal transcription... 0.02 OrthoFinder output from all 47 species
MA_117108g0010 TAF2 Transcription initiation factor TFIID subunit 2... 0.02 OrthoFinder output from all 47 species
MA_20073g0010 TAF2 component TAF2 of TFIId basal transcription regulation complex 0.03 OrthoFinder output from all 47 species
Mp1g11110.1 TAF2 component TAF2 of TFIId basal transcription regulation complex 0.01 OrthoFinder output from all 47 species
Mp1g11120.1 TAF2 component TAF2 of TFIId basal transcription regulation complex 0.01 OrthoFinder output from all 47 species
Pir_g09825 TAF2 component *(TAF2) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Pnu_g27339 TAF2 component *(TAF2) of TFIId basal transcription... 0.04 OrthoFinder output from all 47 species
Ppi_g11395 TAF2 component *(TAF2) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020423 TAF2 component *(TAF2) of TFIId basal transcription... 0.04 OrthoFinder output from all 47 species
Sam_g33556 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52102 No alias component *(TAF2) of TFIId basal transcription... 0.02 OrthoFinder output from all 47 species
Smo402861 TAF2 RNA biosynthesis.RNA polymerase II-dependent... 0.08 OrthoFinder output from all 47 species
Solyc03g119780.4.1 TAF2, Solyc03g119780 component TAF2 of TFIId basal transcription regulation complex 0.04 OrthoFinder output from all 47 species
Zm00001e034094_P001 TAF2, Zm00001e034094 component TAF2 of TFIId basal transcription regulation complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008237 metallopeptidase activity IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR014782 Peptidase_M1_dom 310 494
No external refs found!