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  5. Ala_g02467

Ala_g02467 (ATSGS3, SGS3)


Aliases : ATSGS3, SGS3

Description : stabilization factor *(SGS3) of transacting siRNA pathway & original description: none


Gene families : OG0002879 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002879_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g02467

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00113800 ATSGS3, SGS3,... Chromatin organisation.DNA methylation.non-canonical... 0.02 OrthoFinder output from all 47 species
Cba_g07722 ATSGS3, SGS3 stabilization factor *(SGS3) of transacting siRNA... 0.03 OrthoFinder output from all 47 species
MA_4292002g0010 ATSGS3, SGS3 SGS3 stabilization factor of DNA methylation pathway 0.02 OrthoFinder output from all 47 species
Spa_g05768 ATSGS3, SGS3 stabilization factor *(SGS3) of transacting siRNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0031047 RNA-mediated gene silencing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005380 XS_domain 449 562
No external refs found!