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  5. Ala_g02014

Ala_g02014 (SNM1, ATSNM1)


Aliases : SNM1, ATSNM1

Description : interstrand crosslink repair factor *(SNM) & original description: none


Gene families : OG0001699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001699_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g02014
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00244350 SNM1, ATSNM1,... DNA damage response.DNA repair mechanisms.interstrand... 0.06 OrthoFinder output from all 47 species
Azfi_s0112.g045765 SNM1, ATSNM1 not classified & original description: CDS=1-1590 0.03 OrthoFinder output from all 47 species
Ceric.39G017300.1 Ceric.39G017300 not classified & original description: pacid=50582945... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021374.33 AtLIG6, LIG6 DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g46686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo96540 AtLIG6, LIG6 DNA ligase 6 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0051087 chaperone binding IEP HCCA
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 289 414
IPR011084 DRMBL 483 588
No external refs found!