Ala_g01957

Description : not classified & original description: none

Gene families : OG0005997 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005997_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ala_g01957

Target	Alias	Description	ECC score	Gene Family Method
AT1G59990	No alias	DEA(D/H)-box RNA helicase family protein	0.02	OrthoFinder output from all 47 species
Adi_g024183	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g68671	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0041.g026719	No alias	not classified & original description: CDS=40-1947	0.03	OrthoFinder output from all 47 species
Ceric.13G012600.1	Ceric.13G012600	not classified & original description: pacid=50635549...	0.03	OrthoFinder output from all 47 species
Dac_g21982	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01020175001	No alias	DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Zm00001e034031_P002	Zm00001e034031	DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	129	304
IPR001650	Helicase_C	447	557

External Links

No external refs found!